FastQCFastQC Report
Sat 31 Dec 2022
SRR1954816.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954816.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences647075
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51170.7907893211760615No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG38150.5895761696866669No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC35500.5486226480701618No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC33570.5187961210060658No Hit
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC15030.23227601128153613No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT11340.17525016420044043No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAACGACGT11200.17308658192636092No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCT8970.13862380713209443No Hit
GAACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT8920.13785109917706603No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8740.1350693505389638No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTC8220.12703318780666847No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC7900.12208785689448673No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCC7350.11358806938917437No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAACGACGTCGTA6980.10787003052196423No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC6840.10570644824788472No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG6710.10369740756481088No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)