FastQCFastQC Report
Sat 31 Dec 2022
SRR1954809.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954809.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228872
Sequences flagged as poor quality0
Sequence length51
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14160.6186864273480374No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4240.18525638784997728No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4020.1756440281030445No Hit
GAATCTATCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC3790.1655947429130693No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG3580.15641930860917894No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC3500.15292390506483974No Hit
CTGTCTATTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT3170.13850536544444056No Hit
CCTGTCACTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC2840.12408682582404139No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2340.10224055367192143No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)