FastQCFastQC Report
Sat 31 Dec 2022
SRR1954808.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954808.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1555459
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT112290.721909095643151No Hit
GAATCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTC63790.4101040271714008No Hit
CTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGCT46780.30074723923934993Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC36270.23317875945299749No Hit
GCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTGC35340.22719981690292063No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCG33060.2125417641995064No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGC27290.17544660450709407No Hit
CGCTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCTG23330.14998788139063773No Hit
GAACTGTCTCTTATACACATCTGACGCAACGTTGGTCGTATGCCGTCTTCT22110.14214453740021435No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)