FastQCFastQC Report
Sat 31 Dec 2022
SRR1954804.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954804.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences996290
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT220362.211805799516205No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG43870.440333637796224No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC41960.42116251292294415No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC40820.4097200614278975No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39710.3985787270774574No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC39260.39406196990836No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT34940.35070110108502545No Hit
CCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC31440.3155707675476016No Hit
GCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC22190.22272631462726716No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19310.19381906874504412No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC16330.16390809904746612No Hit
GAACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCT13850.13901574842666292No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTA13650.13700830079595297No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCT13090.13138744742996517No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG12250.12295616738098344No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTCGCTT12240.12285579499944795No Hit
TCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC12050.1209487197502735No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTC11600.11643196258117616No Hit
ACTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC10390.10428690441538106No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)