FastQCFastQC Report
Sat 31 Dec 2022
SRR1954803.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954803.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381047
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56971.4950911567339462No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCG11700.30704873677000477No Hit
GAATCTATCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTC11230.29471430033565416No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGC10520.2760814282752521No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8350.21913307282303757No Hit
CTGTCTATTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT7830.20548646229992623No Hit
CCTGTCACTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC7250.19026524287030208No Hit
GCTGTCACTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGC5470.143551845310421No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5300.13909045340863463No Hit
CGTTTTATTTCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC3970.1041866226475999No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)