FastQCFastQC Report
Sat 31 Dec 2022
SRR1954795.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954795.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences185085
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19261.0406029662047167No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5270.2847340411162439No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5140.2777102412405111No Hit
CTGTCTATTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT4240.229083934408515Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCACTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC2890.15614447416052085No Hit
GCTGTCACTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC2720.14695950509225492No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG2660.14371775130345515No Hit
GAATCTATCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC2170.11724342869492395No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2070.11184050571359104No Hit
TTTGTAAGGATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACT1960.10589729043412487No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1940.10481670583785828No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1920.1037361212415917No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)