FastQCFastQC Report
Sat 31 Dec 2022
SRR1954793.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954793.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172954
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24281.4038414838627613No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7250.4191866045306845No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5110.2954542826416272No Hit
CTGTCTATTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT3150.18212935231333185No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2750.15900181551163892No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2450.14165616291036923No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC2250.13009239450952276No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2210.12777964082935347No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG2110.12199775662893023No Hit
GAATCTATCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC2080.12026319136880326No Hit
GCTGTCACTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC1930.11159036506816843No Hit
CCTGTCACTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC1830.10580848086774518No Hit
GGTTTAAGGAGGAAAGAAAAATCTTTGCGGGATAGTTTAGCAAAAGAAAGG1800.10407391560761821No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)