FastQCFastQC Report
Sat 31 Dec 2022
SRR1954791.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954791.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159397
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21501.34883341593631No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6410.40214056726287195No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG6160.38645645777524046No Hit
GAATCTATCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC5500.3450504087278932No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGC4990.31305482537312496No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4070.255337302458641No Hit
CTGTCTATTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT2490.15621373049680984No Hit
GCTGTCACTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC2230.1399022566296731No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2180.13676543473214678No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCG1990.12484551152154684No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1900.11919923210599948No Hit
GAATGAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTC1780.11167085955193636No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1750.10978876641342059No Hit
GTGTGAAGGATATCTTTTGGCTTACTTTAATTTGTTTTTCTCTGGGGATAA1670.10476985137737849No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC1660.10414248699787323No Hit
CGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1620.1016330294798522No Hit
CCTGTCACTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC1610.10100566510034693No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)