FastQCFastQC Report
Sat 31 Dec 2022
SRR1954787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555932
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25630.4610276076930272No Hit
CTGTCTATTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT13770.247692163789816No Hit
GCTGTCACTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC9020.16225005935977782No Hit
CCTGTCACTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC7820.1406646856090313No Hit
GAATCTATCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC5710.10271040343063541No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)