FastQCFastQC Report
Sat 31 Dec 2022
SRR1954786.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954786.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1173976
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT88680.7553817113808118No Hit
CTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCCGTCTTCTGCT15240.12981526027789322No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14760.1257265906628415No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAAGCAGTCGTATGCC13260.11294949811580476No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)