FastQCFastQC Report
Sat 31 Dec 2022
SRR1954780.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954780.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589149
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT106571.8088802662823835No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT23800.4039725095009921Illumina Single End Adapter 2 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18480.3136727720831233No Hit
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC18110.30739252718751964No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC17100.2902491559860069No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15310.25986634959916766No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCC12710.21573489898141215No Hit
TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC10220.17347054819748486No Hit
ACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC8440.14325747815917536No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)