FastQCFastQC Report
Sat 31 Dec 2022
SRR1954769.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954769.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483283
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32300.6683454621826135No Hit
GAATCTATCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTC8040.1663621521965391No Hit
CTGTCTATTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT7200.14898103181779618No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCG6470.13387601053626966No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGC4860.10056219647701244No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)