FastQCFastQC Report
Sat 31 Dec 2022
SRR1954767.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954767.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences234895
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13340.5679133229740948No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3920.16688307541667555No Hit
CTGTCTATTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT3430.14602269098959111Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3070.13069669426765151No Hit
CCTGTCACTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC2970.1264394729560016No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2590.11026203197173204No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)