FastQCFastQC Report
Sat 31 Dec 2022
SRR1954758.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954758.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1549199
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT147720.9535250151852668No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTC51010.32926693084619857No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCG30020.19377755859641016No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGC19000.12264402442810768No Hit
GAACTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCT18530.11961019856067555No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCC15930.10282733205998712No Hit
GCTGTCTCTTATACACATCTGACGCCAGAGCATTCGTATGCCGTCTTCTGC15650.10101994643683607No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)