SRR1954754.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1954754.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527286
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5939	1.1263337164271383	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	979	0.18566774008792192	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCC	804	0.15247892035821167	No Hit
CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT	798	0.15134101796747873	TruSeq Adapter, Index 21 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	700	0.132755278918841	No Hit
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	583	0.11056618229954901	TruSeq Adapter, Index 15 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC	536	0.10165261357214112	No Hit
CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	529	0.1003250607829527	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGCG	30	2.1632568E-6	45.000004	1
TAGTACG	30	2.1632568E-6	45.000004	1
GGCGTTG	20	7.029811E-4	45.0	21
GACGTAA	20	7.029811E-4	45.0	20
ATTACGG	35	1.2102464E-7	45.0	2
ATAGCGG	25	3.8879232E-5	45.0	2
ACGGGTA	20	7.029811E-4	45.0	5
ACGGGCG	80	0.0	45.0	5
GACGGTC	20	7.029811E-4	45.0	29
TTGCGAG	40	6.8030204E-9	45.0	1
CGCAGTA	40	6.8030204E-9	45.0	37
TTAACGG	35	1.2102464E-7	45.0	2
GCGGCGA	20	7.029811E-4	45.0	9
GTATACG	20	7.029811E-4	45.0	1
ACACTCG	20	7.029811E-4	45.0	44
GCGTGAC	20	7.029811E-4	45.0	31
TAGTGCG	25	3.8879232E-5	45.0	1
AGTACGG	45	3.8380676E-10	45.0	2
AGTAACG	25	3.8879232E-5	45.0	1
ATCGAAG	25	3.8879232E-5	45.0	1