FastQCFastQC Report
Sat 31 Dec 2022
SRR1954745.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954745.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144752
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11010.760611252348845No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4340.2998231457941859No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3110.21485022659445122No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC2500.1727091853653145No Hit
CTGTCTATTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT2120.14645738918978665No Hit
GCTGTCACTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC1750.12089642975572013No Hit
CCTGTCACTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC1680.11606057256549132No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCG1680.11606057256549132No Hit
GAATCTATCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTC1600.11053387863380126No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)