FastQCFastQC Report
Sat 31 Dec 2022
SRR1954744.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954744.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1444417
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT109980.7614144668748707No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC16880.11686375887295705No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT16630.11513295675694762Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC15130.10474814406089102No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)