FastQCFastQC Report
Sat 31 Dec 2022
SRR1954731.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954731.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228038
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25011.096747033389172No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6920.30345819556389725No Hit
GAATCTATCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTC2670.11708574886641701No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2540.11138494461449408No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2450.10743823397854743No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2420.10612266376656522No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)