FastQCFastQC Report
Sat 31 Dec 2022
SRR1954722.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954722.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348718
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34180.9801616205644675No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTC31990.9173601592117412No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCG30760.8820881055752785No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGC19970.5726690334310245No Hit
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC13980.40089699986808824No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT11160.320029364701564No Hit
GAACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT8420.24145584684472843No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCT8210.23543378890679575No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTC7880.22597055500433016No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTCCTATT7780.22310290836721935No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC7390.21191908648248728No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTA6800.19499997132353364No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5920.1697646809169587No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5790.16603674028871468No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCG5570.15972791768707092No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCC5240.15026468378460534No Hit
GGACATCTTTATAAACATCTTAATCTCAACACATAATTTTTGGAATAAAAC5220.14969115445718317No Hit
TCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC5080.14567644916522807No Hit
GAATATGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTC4910.14080144988213972No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTT3910.11212498351103183No Hit
ACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC3660.10495586691825487No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)