FastQCFastQC Report
Sat 31 Dec 2022
SRR1954719.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954719.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences290617
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24530.8440662452643858No Hit
GAATCTATCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTC18530.6376089492355919No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGC15390.5295629643138564No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCG14770.5082290437242143No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7380.25394247411541654No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5440.1871879483994398No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTC5080.17480051063771218No Hit
GCTGTCACTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCTGC4900.16860679175684834No Hit
GAATGAACTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTC4860.16723040978332307No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGC4520.15553116300835806No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCG4320.14864925314073163No Hit
GAACTGACTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCT4130.1421114387664865No Hit
GAATGAATGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCT4040.13901457932605457No Hit
GAATCTATCTCTTATACACATCTGACGCGCCATGAATCGTACTGTCTCTTA3960.13626181537900398No Hit
CTGTCTATTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCTGCT3700.12731533255108957No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)