FastQCFastQC Report
Sat 31 Dec 2022
SRR1954718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences661298
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT96211.4548660361894334No Hit
GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC23670.3579324298576436No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG21270.32164016827511954No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16700.25253365351172996No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC15130.22879246572649545No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC13800.20868050409951336No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC13470.20369031813191632No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT12040.18206617893899574No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC10140.15333480518616419No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10040.15182262762022566No Hit
TCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC7380.11159870436626151No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)