FastQCFastQC Report
Sat 31 Dec 2022
SRR1954717.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954717.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263747
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24780.9395367530246789No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7240.27450549200559626No Hit
GAATCTATCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC6100.23128225155167642No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG5080.1926088258823797No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4710.17858023029645836No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC3800.14407746817973285No Hit
CCTGTCACTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC3260.1236033016489287No Hit
CTGTCTATTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT2700.10237083265402071No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)