FastQCFastQC Report
Sat 31 Dec 2022
SRR1954710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1034300
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT82570.7983177027941604No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT60520.5851300396403364No Hit
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC43740.4228947113990138No Hit
CCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC42360.4095523542492507No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCC33680.3256308614521899No Hit
TCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC25280.2444165135840665No Hit
GAATCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC20170.19501111863095813No Hit
ACTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC18930.18302233394566372No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17400.16822972058396982No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCG17060.1649424731702601No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14220.13748428889103742No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC13390.12945953785168712No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGC13080.12646234168036352No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTC11220.10847916465242192No Hit
CGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG10970.10606207096587063No Hit
AAAACTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC10700.10345160978439524No Hit
AGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG10400.1005510973605337No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)