FastQCFastQC Report
Sat 31 Dec 2022
SRR1954709.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954709.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377852
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21560.5705937774578406No Hit
CTGTCTATTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT13050.34537332077109556No Hit
CCTGTCACTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC9570.25327376856547007No Hit
GCTGTCACTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC8200.21701618623164626No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8120.21489895514645946No Hit
TCTGTCACTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC5260.13920794385103163No Hit
GAATCTATCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC4400.1164477096852736No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)