FastQCFastQC Report
Sat 31 Dec 2022
SRR1954707.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954707.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183935
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16500.8970560252263027No Hit
GAATCTATCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC11290.6138037893821187No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG10090.548563351183842No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC7810.4246065186071167No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7250.3941609807812542No Hit
CTGTCTATTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT5820.31641612526164137No Hit
GCTGTCACTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC5370.2919509609372876No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4620.25117568706336474No Hit
CCTGTCACTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC3540.19245929268491588No Hit
GAATGAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC3480.18919727077500204No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG3250.1766928534536657No Hit
GAATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC3130.17016880963383804No Hit
GAACTGACTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT3050.16581944708728627No Hit
GAATGAATGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT2620.1424416233995705No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2390.12993720607823417No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC2160.11743278875689782No Hit
TCTGTCACTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC1940.10547204175388045No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)