FastQCFastQC Report
Sat 31 Dec 2022
SRR1954704.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954704.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1225399
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT168101.3717980837261985No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCC21210.1730864804035257No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCTTC16160.13187541364078148No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTCT14770.12053216952192713No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCG14330.11694150231883656No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGTC14060.1147381383533037No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGCATCGTATGCCGT14020.11441171406211366No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)