FastQCFastQC Report
Sat 31 Dec 2022
SRR1954690.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954690.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411155
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48131.1706047597621334No Hit
CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT21860.5316729700477922No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCG20930.5090537631793363No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTC20290.4934878573773881No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGC19710.4793812552443726No Hit
GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC15100.36725809001471466No Hit
CCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC14510.3529082706035437No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCC13700.333207671072953No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13020.31666889615838306No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8560.2081939901010568No Hit
TCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC7410.18022400311318115No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGCCTT6750.1641716627549221No Hit
ACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC6020.14641680144957497No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGC5690.13839063127044546No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCT5550.13498558937626928No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCT5480.13328306842918122No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTA5460.13279663387287033No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTC4640.11285281706412424No Hit
AAAACTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTC4470.10871812333548174No Hit
CGCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTG4450.10823168877917087No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCG4170.10142160499081855No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC4160.10117838771266312No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)