FastQCFastQC Report
Sat 31 Dec 2022
SRR1954682.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954682.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311164
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44351.4252934144052654No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC20150.6475684847861578No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC19820.6369631448368063No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG19400.6234654394467226No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT8410.27027548173953286No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC8070.25934876785232225No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7990.2567777763494492No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC7290.23428160069930967No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTAGCCAGT7260.23331747888573226No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6740.21660603411705723No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCC5570.1790052833875384No Hit
GAACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCT4840.15554498592382152No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTC4730.15200987260737103No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT4690.1507243768559345No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTA3990.128228201205795No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC3760.1208366006350349No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC3360.10798164312066949No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG3320.10669614736923294No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC3240.10412515586635987No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)