FastQCFastQC Report
Sat 31 Dec 2022
SRR1954681.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954681.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123599
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11490.9296191716761463No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC4870.3940161328166086No Hit
GAATCTATCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC4560.36893502374614684No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG4350.35194459502099534No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3440.27831940387867216No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2930.23705693411758993No Hit
CTGTCTATTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT1840.14886851835370835No Hit
CCTGTCACTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC1620.13106902159402584No Hit
GCTGTCACTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC1530.12378740928324662No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCG1430.11569672893793638No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGC1400.11326952483434333No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1330.10760604859262615No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTC1260.10194257235090899No Hit
GAATGAATGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCT1260.10194257235090899No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)