FastQCFastQC Report
Sat 31 Dec 2022
SRR1954680.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954680.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379808
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48881.2869660460021906No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC17350.45680975650855166No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG16540.43548319150728787No Hit
GAATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTC15040.3959895526160586No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8640.22748336001348052No Hit
CTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT8570.22564032353188979No Hit
CCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC7110.18719984834442666No Hit
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC7080.18640997556660208No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6360.16745302889881203No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCC6320.16639986519504593No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACAACCAT5480.14428342741595754No Hit
GATTCAGGGACGGCAGAGAAAACCAGAAGTCTGAAATAACTTAGCCCATCA5070.1334884994523549No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTC4090.1076859887100851No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCT4070.10715940685820204No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)