FastQCFastQC Report
Sat 31 Dec 2022
SRR1954679.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954679.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158152
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13290.840330820982346No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC4280.270625727148566No Hit
GAATCTATCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTC4140.26177348373716425No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG3950.2497597248216905No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3930.2484951186200617No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2630.16629571551418887No Hit
CTGTCTATTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT1780.11254995194496434No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1650.10433001163437707No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)