FastQCFastQC Report
Sat 31 Dec 2022
SRR1954677.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954677.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91369
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6800.744234915562171No Hit
GAATCTATCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC3260.35679497422539375No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2530.27689916711357243No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG2450.2681434622246057No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGC1840.20138121244623453No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1630.17839748711269687No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1290.14118574133458833No Hit
CTGTCTATTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT1260.1379023520012258No Hit
GCTGTCACTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC1240.13571342577898413No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC980.1072573848898423No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)