FastQCFastQC Report
Sat 31 Dec 2022
SRR1954675.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954675.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124397
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10690.8593454826081015No Hit
GAATCTATCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC3770.3030619709478525No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG3550.28537665699333586No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGC3380.2717107325739367No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2600.2090082558261051No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1880.15112904652041448No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG1460.11736617442542827No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)