FastQCFastQC Report
Sat 31 Dec 2022
SRR1954671.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954671.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133391
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7490.5615071481584214No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2370.17767315635987435No Hit
GAATCTATCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC2320.17392477753371666No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG2080.15593255916815976No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1590.11919844667181445No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC1530.11470039208042522No Hit
GCTGTCACTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC1420.10645395866287831No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)