FastQCFastQC Report
Sat 31 Dec 2022
SRR1954667.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954667.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52101
Sequences flagged as poor quality0
Sequence length51
%GC38

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4220.8099652597838813No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGCCG1760.3378054164027562No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGC1240.2379992706473964No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1200.23032187482006106No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1160.22264447899272566No Hit
GAATCTATCTCTTATACACATCTGACGCTAACGCGATCGTATGCCGTCTTC900.17274140611504576No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)