FastQCFastQC Report
Sat 31 Dec 2022
SRR1954649.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954649.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57798
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7451.2889719367452162No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG3260.5640333575556248No Hit
GAATCTATCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC2980.5155887746980865No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC2270.39274715388075715No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1900.3287310979618672No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1320.22838160489982354No Hit
GCTGTCACTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC1000.17301636734835116No Hit
CTGTCTATTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT970.1678258763279006No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC900.15571473061351604No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG890.15398456694003254No Hit
GAATGAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC760.13149243918474687No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT730.12630194816429632No Hit
CCTGTCACTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC720.12457178449081284No Hit
GAATGAATGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT680.11765112979687878No Hit
GAACTGACTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT670.11592096612339528No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC610.10553998408249421No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)