FastQCFastQC Report
Sat 31 Dec 2022
SRR1954647.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954647.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85559
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8931.0437242137004874No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCG4920.5750417840320715No Hit
GAATCTATCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTC3740.43712525859348517No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGC3420.3997241669491228No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2740.3202468472048528No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCG1470.17181126474128963No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1330.1554482871468811No Hit
GCTGTCACTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC1300.15194193480522214No Hit
GAATGAATGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT1210.1414228777802452No Hit
GAATCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTC1070.12505990018583668No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGC1070.12505990018583668No Hit
CCTGTCACTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC970.11337205904697342No Hit
GAATGAACTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTC960.1122032749330871No Hit
CTGTCTATTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT910.10635935436365548No Hit
GAACTGACTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCT900.10519057024976916No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)