FastQCFastQC Report
Sat 31 Dec 2022
SRR1954644.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954644.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200969
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28121.399220775343461No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC16700.8309739313028377No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG15970.7946499211321149No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC10750.5349083689524254No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT9040.4498206191004583No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC8040.4000617010583722No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC6750.3358726967840811No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTC5630.28014270857694473No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5120.2547656603754808No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCT4940.24580905512790527No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4860.2418283416845384No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGGTACAT4590.22839343381317517No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCC4350.2164512934830745No Hit
GAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT3610.1796296941319308No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGGTACATCGTA3310.16470201871930495No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC3080.15325746756962516No Hit
ACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC2720.13534425707447417No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG2340.11643586821848145No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTT2330.1159382790380606No Hit
TTTAGTGGGATCCCTGTTGTGTTTTAGCTGCCCCAACTCTATGATATGTGC2060.10250337116669735No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)