FastQCFastQC Report
Sat 31 Dec 2022
SRR1954643.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954643.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80047
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7710.9631841293240221No Hit
GAATCTATCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC4490.5609204592302023No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG3920.489712294027259No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC2800.3497944957337564No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2310.28858045898034906No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2270.2835833947555811No Hit
GCTGTCACTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC2030.25360100940697344No Hit
CTGTCTATTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT1970.24610541306982148No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG1530.19113770659737406No Hit
CCTGTCACTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC1480.1848913763164141No Hit
GAATGAACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTC1460.18239284420403012No Hit
GAATGAATGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCT1270.15865678913638237No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC1050.13117293590015866No Hit
GAACTGACTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT960.11992954139443077No Hit
TTTAGTAGGATCCCTGTTGTGTTTTAGCTGCCCCAACTCTATGATATGTGC880.10993541294489488No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)