FastQCFastQC Report
Sat 31 Dec 2022
SRR1954634.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954634.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1305453
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT316292.4228371300996665No Hit
GAATCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC42900.328621558953099No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTT22760.17434561029772808No Hit
CGTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTC19270.14761159536191654No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCT19030.145773153074067No Hit
GAACTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCT17170.13152522534323335No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCG17150.1313720218192459No Hit
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC15470.11850292580429934No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT15010.1149792447525878No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCC14860.11383021832268186No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC14150.10839149322112707No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTC13080.10019510468779803No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)