FastQCFastQC Report
Sat 31 Dec 2022
SRR1954631.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954631.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168497
Sequences flagged as poor quality0
Sequence length51
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14260.8463058689472216No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3910.232051609227464No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3390.20119052564734088No Hit
CTGTCTATTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT2670.15845979453640124No Hit
CCTGTCACTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC2440.14480969987596218No Hit
GCTGTCACTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC1860.11038772203659412No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1780.10563986302426749No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)