FastQCFastQC Report
Sat 31 Dec 2022
SRR1954619.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954619.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137674
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11630.8447491901157808No Hit
GAATCTATCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC3890.282551534785072No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2970.21572700727806268No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCG2810.20410535032032193No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGC2230.16197684384851171No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1450.10532126617952556No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)