FastQCFastQC Report
Sat 31 Dec 2022
SRR1954617.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954617.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119590
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8800.7358474788861945No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2650.22159043398277448No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1780.14884187641107116No Hit
GAATCTATCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC1730.1446609248264905No Hit
GGTAATAGGAACATCATGAACAAGATATTAAATTGTACCTAAGGATTTGTA1450.12124759595283886No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1430.11957521531900661No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCG1390.11623045405134208No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGC1350.11288569278367756No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)