FastQCFastQC Report
Sat 31 Dec 2022
SRR1954611.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954611.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences304549
Sequences flagged as poor quality0
Sequence length51
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17030.5591875199064846No Hit
GAATCTATCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC7960.26137009151236745No Hit
CTGTCTATTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT5500.18059491247713833Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4620.1516997264807962No Hit
GCTGTCACTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC4370.14349086682274445No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG4180.1372521334826251No Hit
CCTGTCACTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC4030.13232681768779408No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC3270.10737188432731679No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)