FastQCFastQC Report
Sat 31 Dec 2022
SRR1954609.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954609.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80944
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5840.7214864597746591No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1830.22608222968966196No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC1490.184077881004151No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG1490.184077881004151No Hit
GAATCTATCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC1480.18284245898398893No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC1130.13960268827831587No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1120.1383672662581538No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)