FastQCFastQC Report
Sat 31 Dec 2022
SRR1954607.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954607.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81585
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4910.6018263161120304No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1600.19611448182876756No Hit
GAATCTATCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTC1480.18140589569160998No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG1200.14708586137157567No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGC1150.14095728381442665No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA980.12012012012012012No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)