SRR1954593.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1954593.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	101003
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	965	0.9554171658267576	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	283	0.28018969733572274	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	169	0.16732176271991922	No Hit
CGTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	103	0.10197716899498036	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTGC	20	7.0027326E-4	45.000004	20
TGTCACT	30	2.1458236E-6	45.000004	3
CTGTCAC	30	2.1458236E-6	45.000004	2
GGAGCTT	20	7.0027326E-4	45.000004	8
GGATGCC	20	7.0027326E-4	45.000004	8
CGGTTTA	20	7.0027326E-4	45.000004	1
AAGGTAT	20	7.0027326E-4	45.000004	6
CGATTGG	20	7.0027326E-4	45.000004	10
TCTACTA	20	7.0027326E-4	45.000004	24
AGGTTCA	20	7.0027326E-4	45.000004	7
GTCACTT	30	2.1458236E-6	45.000004	4
GGAGTGT	20	7.0027326E-4	45.000004	8
GCAGGAT	20	7.0027326E-4	45.000004	5
GCAGGAC	20	7.0027326E-4	45.000004	5
CACACCC	20	7.0027326E-4	45.000004	29
GGCGATA	40	6.708433E-9	45.000004	8
GTAAGGC	40	6.708433E-9	45.000004	4
TACAGGA	20	7.0027326E-4	45.000004	4
CCTATCT	20	7.0027326E-4	45.000004	4
CCAGTCT	20	7.0027326E-4	45.000004	5