FastQCFastQC Report
Sat 31 Dec 2022
SRR1954587.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954587.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131673
Sequences flagged as poor quality0
Sequence length51
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13080.9933699391674831No Hit
GAATCTATCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC7560.5741495978674444No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG5030.3820069414382599No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC4580.34783137013662635No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3950.2999855703143393No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3330.25289922763208855No Hit
GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC2060.15644817084747822No Hit
GAATGAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC1790.13594282806649807No Hit
GAACTGACTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT1780.13518337092646177No Hit
CCTGTCACTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC1640.12455097096595355No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC1630.12379151382591724No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG1500.1139185710054453No Hit
GAATGAATGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT1460.1108807424453001No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)