FastQCFastQC Report
Sat 31 Dec 2022
SRR1954579.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954579.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100730
Sequences flagged as poor quality0
Sequence length51
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8590.8527747443661273No Hit
GAATCTATCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC2530.25116648466196767No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2250.22336940335550481No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGC1790.17770276978060162No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1790.17770276978060162No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCG1750.17373175816539263No Hit
CTGTCTATTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT1120.11118832522585129No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)