FastQCFastQC Report
Sat 31 Dec 2022
SRR1954566.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1954566.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443922
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36080.8127553939656066No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCG10800.24328598267263166No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC8680.19552984533318918No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGC7350.1655696270966521No Hit
GAATCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTC7080.15948747752983633No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)